Protein Info for Dsui_3418 in Dechlorosoma suillum PS

Annotation: putative permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 26 to 51 (26 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 97 to 118 (22 residues), see Phobius details amino acids 135 to 159 (25 residues), see Phobius details amino acids 177 to 211 (35 residues), see Phobius details amino acids 226 to 243 (18 residues), see Phobius details PF01925: TauE" amino acids 2 to 236 (235 residues), 133.5 bits, see alignment E=5.1e-43

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 58% identity to sur:STAUR_8369)

Predicted SEED Role

"PROBABLE INTEGRAL MEMBRANE TRANSMEMBRANE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QKK9 at UniProt or InterPro

Protein Sequence (244 amino acids)

>Dsui_3418 putative permease (Dechlorosoma suillum PS)
MLLAVGTLAGAMNALAGGGSFVTLPALILAGVPSTVANATSTVALFPGALASAWTLRRDF
APFPGVATSRLLAVSLAGGLIGAILLLLTPSRHFDLLVPWLLLLGAVAFAWGGAAGRLLR
RQRHPGPGVMLAGQGLLAVYGGYFGGAVGIMMMALWGIWGHTELRAVNGAKSLFVGATNA
VAVLCFIVAGQVRWGAGLALAAGAVAGGWLGARLSQRLEPRRLRKGVVLLNFLMAGAFFW
RTYG