Protein Info for Dsui_3355 in Dechlorosoma suillum PS

Annotation: DNA/RNA helicase, superfamily II

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 905 PF04851: ResIII" amino acids 1 to 244 (244 residues), 55.3 bits, see alignment E=4e-19

Best Hits

Predicted SEED Role

"FIG00647261: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QK06 at UniProt or InterPro

Protein Sequence (905 amino acids)

>Dsui_3355 DNA/RNA helicase, superfamily II (Dechlorosoma suillum PS)
MELKDYQADVLTDLSKYLETLLECKGHLPNAFAQYWKDRGVLNQAYKNNIKEVPHVCVKV
PTAGGKTFIAVNALERIFSAFAEYNPTRPKFVVWLVPSLTILEQTVKNLSNIDHSYRQRL
NDLFSGRVQIYEKADVLQGAGFNADTVKEQLSVVVMSFDSLKATNKENRKAFQENGYLAS
FLNDDSEIVEPLEGTDPSALINVMRSLKPVVVVDESHNAESNLSVDMLRNLNPSFIFDLT
ATPRDNSNIISYVDALRLKKQNMVKLPVIVANQRSQEDVIMAALNMRRQLEEFAKKTEEK
GGGYIRPIVLFQAEPKNKDDTTTFEKVREILLELNIPKEHIAIKTANINELKNVDLMSRD
CPVRYIITVNALKEGWDCPFAYVLATLANKSSVVDVTQILGRVLRMPYTRKHGIELLNLS
YVFTSSSHFQNTLSQVVAGLNKAGFSKRDYREFDLSEVEQEQGTTTSPTQEELNLTAQTG
EEKLTETGDGQDLEIETHKLNPDWEQQAVEQAVNVDTSSTQPALSAVGNATGVEAIKAQA
VAQAQEFEEQANAASGESCPEELKAHMNEHKMKPIFEESAKAIRLPQFFIKLPSDGGFFD
SGDEWHKLAKENLLPNFVLANLDATINFTAVESDVYKVDAEEIGNGESAPSFTVVKKAEK
EKLNSIIKSQPTSGQITSIVGRLFGLIGKNTFYPIEDNDVKHYLKRIVEAMNADQRADCL
ERDYAYVKLIKEKIQGLANEYAAKEFSNWLTTQKIKLRPSFSLPATIAPSDNAPAISKSL
YVTEGGVNNLEGKVIRGVADLENIVWWHRNLERGKGFVINGFLNHYPDFIVLTQSKNIIV
VETKGDDRDNSDSKDKLKLGKIWESQANQIAHETGYRYHYMMVFESNPIDGAHTTGDVLK
LIEAL