Protein Info for Dsui_3287 in Dechlorosoma suillum PS

Annotation: response regulator containing a CheY-like receiver domain and an HD-GYP domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 PF00072: Response_reg" amino acids 28 to 139 (112 residues), 75.2 bits, see alignment E=4.5e-25 PF07228: SpoIIE" amino acids 205 to 393 (189 residues), 107.3 bits, see alignment E=1e-34

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QJE9 at UniProt or InterPro

Protein Sequence (394 amino acids)

>Dsui_3287 response regulator containing a CheY-like receiver domain and an HD-GYP domain (Dechlorosoma suillum PS)
MSHASDQGSSGLPAGRGCPWRTLRRPIILIVDDARENVEVLADCLQFEYDLRFAYNGPEA
LACAVDEPPPDLILLDVMMPGMDGYEVLDRLKSDPATAAIPVVFVTAMTAIRDEVRGLAL
GAVDFIGRPVSPSIVRARVRSHVALAEARRQLAEQNQWLMHERCLAEDILTRLRETETFD
CHKLRYVLSSVDRSNGDMLLSAMTPDRRQWVLVGDISGHGPASAVVAPLLGHVFYSQAAE
NGDAEALLIELNRVMFQRLPLQMFMAFALVEVNAARDRLRVWNGGMPGCFNRSGRGKLTL
VGSTYYPLGLQPNLGETEAPTELVFHPRDRFYLFTDGFCECEDENGKAFGEEAIFALLAE
PGPRRSVQGIWLAAARYHGSDQFRDDLTLVELRP