Protein Info for Dsui_3203 in Dechlorosoma suillum PS

Annotation: arabinose efflux permease family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 42 to 63 (22 residues), see Phobius details amino acids 73 to 91 (19 residues), see Phobius details amino acids 97 to 119 (23 residues), see Phobius details amino acids 135 to 154 (20 residues), see Phobius details amino acids 160 to 178 (19 residues), see Phobius details amino acids 204 to 226 (23 residues), see Phobius details amino acids 238 to 256 (19 residues), see Phobius details amino acids 267 to 286 (20 residues), see Phobius details amino acids 297 to 317 (21 residues), see Phobius details amino acids 329 to 350 (22 residues), see Phobius details amino acids 356 to 377 (22 residues), see Phobius details PF12832: MFS_1_like" amino acids 7 to 359 (353 residues), 335.2 bits, see alignment E=1e-103 PF01306: LacY_symp" amino acids 7 to 178 (172 residues), 41.8 bits, see alignment E=1.3e-14 PF03825: Nuc_H_symport" amino acids 9 to 368 (360 residues), 86.1 bits, see alignment E=5.4e-28 PF07690: MFS_1" amino acids 13 to 284 (272 residues), 61.4 bits, see alignment E=1.5e-20 amino acids 252 to 384 (133 residues), 48.3 bits, see alignment E=1.4e-16

Best Hits

KEGG orthology group: K05820, MFS transporter, PPP family, 3-phenylpropionic acid transporter (inferred from 66% identity to app:CAP2UW1_1222)

Predicted SEED Role

"Nucleoside:H+ symporter:Major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QIS5 at UniProt or InterPro

Protein Sequence (388 amino acids)

>Dsui_3203 arabinose efflux permease family protein (Dechlorosoma suillum PS)
MHPSLPYWRLSGYYFFHFAFVGVFQPYFGLYLQSLGLSSWEIGLILSQMALMRLCSPAVW
GWLADHLHVRIPLVRLAAGVSVVVFNLFFFAQTLVPLLGAMALLAFFWSAALPLMETVVF
DHLHAEPARYSRVRIWGSIGYIVTVLATGALLDYLPPASVLWMSFALMGGILAFALLVPE
SPTPPQHVATPPVSTILAQPRVRALLGACFLMSAAHGALYLFYSIYLADHGYSKTLVGSL
WFLGVIAEIGVFFFMARLLRRFSLRQVLLASFAAAVLRFLLIGWGVDSLPVLLGAQLLHG
LTFGAYHAAAIAAINRWFPGRCQARGQALYSSLSFGAGGLLGGLVSGWTWDGLGNAATFG
IGALFAVCGLVLVAGWVRDESAPAAPVR