Protein Info for Dsui_3196 in Dechlorosoma suillum PS

Annotation: FimV N-terminal domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1002 transmembrane" amino acids 479 to 498 (20 residues), see Phobius details TIGR03505: FimV N-terminal domain" amino acids 201 to 273 (73 residues), 78.3 bits, see alignment 3e-26 TIGR03504: FimV C-terminal domain" amino acids 957 to 999 (43 residues), 66.1 bits, see alignment (E = 2.2e-22)

Best Hits

Predicted SEED Role

"Translation initiation factor 2" in subsystem NusA-TFII Cluster or Translation initiation factors eukaryotic and archaeal or Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QIR8 at UniProt or InterPro

Protein Sequence (1002 amino acids)

>Dsui_3196 FimV N-terminal domain protein (Dechlorosoma suillum PS)
MPFAADAAGLGKITVYSGLGQPLRAEVEVSATKAELSNMTARLASQDSFAQAGIEYASTL
LGIRFSLDQKGAQPVIRISSDKPINDPFVDMLLELSWPSGRLVREYTFLLDPPEMAIKGG
VQVSTVEAKQPPRLETRPLAPVEEKPAARAVEEKPAKVTASRKPKVVAEEKPVAEARPAA
EKKTAEQPAAAVGSVEVKKGDTLRKIAGETVHEGVSLEQMLVGLYRANKEAFDGGNMNRL
KAGKILAVPDKESVAAVSESEARKIVFAQSSDWNAYRRKLAGAVAQEAPKDDGATQAVAG
RVTAKVEDKAAPAAAPKDQVKVAKTEGPATGKAGAGKASEEDLIAKDKALKDANERMAAL
EKNVSELQKLLELKNQNLADLQKQAAAKPAAAAPLPAAAPAKPAETAPVEPPKPEVKPEP
PKVEEAKPAEAAKPEEKPAEAAAPETKPEPTPAPKPPVVVPPPAPVEEPSLVDELLDNLP
LLGGGLVAIAGLGALAVVRRRRQAPAGESTLPPTSSLSQPSLGANSVFKSTGGQSVDTSN
TPATDFSQAGPGTIDTDEVDPVAEADVYMAYGRDAQAEEILLEAMQKDPKRFAIHVKLLE
IYANRKAVKQFETLASELYAQTGGVGAEWEKAAAMGAKLDPANPLYGGNPAPAATAAAAA
DFDPDATMIVGAEQLKDTVTMPGTLSQLAEAAAEAEPLPVVEAPQEVAVEPVPDLVSLDF
DLGLEAPAAPQADAAAEVAAEPEAALPGAMDFDLDLGAAEPAPAAAAEPEVLDFQLPEAA
PEAAPEAAPAAPADNIIDFDLDLGAGAEEAISITAEAPGGDLDIQLDDEALPVEEAPRAF
DLSSINLDLDAAPAPAAEPATSAADDTVVLPEVADEALSLDDLAAAAAETTLTPAADETV
VMPELAMEEVTAAPAPSFDSAETVVNPELGAQLEAQLEAEQAADAEGDDARWQEVATKLD
LAKAYEEMGDLEGARELLQEVLGEGNAEQQDVARTLMERVGS