Protein Info for Dsui_3071 in Dechlorosoma suillum PS

Annotation: SprA-related family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF12118: SprA-related" amino acids 80 to 198 (119 residues), 95.9 bits, see alignment E=1.6e-31

Best Hits

Predicted SEED Role

"SrpA-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QHL2 at UniProt or InterPro

Protein Sequence (262 amino acids)

>Dsui_3071 SprA-related family (Dechlorosoma suillum PS)
MIGSLSASGIASVYPVATGGVAAPVQRPAAGGAQAAESGSGASSSGSGSAAASGAEWNGG
YGQSLGKNPFAAAAGKSELSEDEQRQVEKLKETDRKVRAHEQAHIAAGGALVQGGASYTY
DKGPDGRMYAVAGEVSIDVSPGRTPEESLAKAQQIRAAAMAPADPSPQDRRVAAGAARLE
SSARAEQAKEQATEAAAAQEGSGSTGGVSGEQASAPAAAEAAVVGPSGAASGGGARGEAA
YRLESVGVRETAVSRSRVDLFA