Protein Info for Dsui_2912 in Dechlorosoma suillum PS

Annotation: putative xylanase/chitin deacetylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 PF01522: Polysacc_deac_1" amino acids 19 to 168 (150 residues), 25.4 bits, see alignment E=6.1e-10

Best Hits

KEGG orthology group: None (inferred from 50% identity to rso:RSc1318)

Predicted SEED Role

"Polymyxin resistance protein PmrJ, predicted deacetylase" in subsystem Lipid A-Ara4N pathway ( Polymyxin resistance )

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QGD0 at UniProt or InterPro

Protein Sequence (302 amino acids)

>Dsui_2912 putative xylanase/chitin deacetylase (Dechlorosoma suillum PS)
MSQPKLALKINVDTLRGARVGVPRLVEALQKHGAQATFFFSLGKDNTGYVPPRTTPAGQK
TFSRLERYGFTSLLYGAWIPAPEIGRRAAHILRAVHEAGFETGIQSWDRVMWQKKLAQAD
NEWVEVEMAKAAKRYEDILGQRPAAGAASGWQTTRHALRLTQRLGLAYASDTRGTGPYLP
VIEGELVNCPQLPTTLPTAEEMVGRDGITAETYADRLLALTHDAPDNGHVFTLHAELEGM
KLLPEFERLLAGWKEQGYELVACRQMVDALDRDMLPRCQVTRGEVPGRAGQLMQQGPEFL
MG