Protein Info for Dsui_2856 in Dechlorosoma suillum PS

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 673 transmembrane" amino acids 22 to 40 (19 residues), see Phobius details amino acids 320 to 345 (26 residues), see Phobius details PF00672: HAMP" amino acids 353 to 387 (35 residues), 30.6 bits, see alignment (E = 3.4e-11) PF00015: MCPsignal" amino acids 459 to 638 (180 residues), 166.7 bits, see alignment E=4.5e-53

Best Hits

KEGG orthology group: None (inferred from 51% identity to app:CAP2UW1_1043)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QFS9 at UniProt or InterPro

Protein Sequence (673 amino acids)

>Dsui_2856 methyl-accepting chemotaxis protein (Dechlorosoma suillum PS)
MMQILFAPAIALMHRLTYPKKFALIGLVALIAIAVLFVNLSRQLQSQIHLANDELAALEV
IVPMDRLVQFTQQHRGLSAGVINGDASLLPKREAKTGEVKTALQGLGPILPASVAASEEW
KKINEEWNLIAADGLSWTATESFAAHTRLIAAILQLKVDVADESGLTIDPNMDSYYLLET
AVVKLPSMLERLGQTRAKGTGILAKKSINDHQRVDIGILMAQVSDTLAALNVNLQKTARH
NPAIRDTLGTSSKDLNEAVSGLVNIVNQDIIAGMFVTDSGDFFKQSTAVIDKGYAQLYDT
LLPTAKQLIGERKAKAERGLLLNLGLSLVMVLVFIYLSAGAYLAIVSCITGFSASAHRIA
QGDLTARIQLQSKDELQQVAGSFNEVAGAFASLTTSVQQSVNQLSASARSMADASEQITL
STQQQSEAASSMAAAIEQMTVGVDHISKNAQDAHALSSQSGDLSARGAQIVGNVVQEIEQ
IASAVNQSAGIVEDLGQHSEKISTIVGVIKEIADQTNLLALNAAIEAARAGEAGRGFAVV
ADEVRKLAERTAHSTQEITDMVAAIQGGTQEAVVSMKHGVERVSQGVELAREAGDAMGQI
QAGAQQVVDMVSDISSSLREQSAASTEIAKNVERIAQMAEENSAAVSENANTAGQLEQLA
EALQTEAARFQAG