Protein Info for Dsui_2806 in Dechlorosoma suillum PS

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1013 transmembrane" amino acids 16 to 35 (20 residues), see Phobius details amino acids 308 to 330 (23 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 336 to 469 (134 residues), 61.7 bits, see alignment E=3.8e-21 amino acids 474 to 591 (118 residues), 79.3 bits, see alignment E=1.4e-26 amino acids 592 to 718 (127 residues), 73 bits, see alignment E=1.2e-24 PF00989: PAS" amino acids 342 to 459 (118 residues), 27.4 bits, see alignment E=9e-10 amino acids 477 to 581 (105 residues), 57.1 bits, see alignment E=5.3e-19 amino acids 597 to 708 (112 residues), 36 bits, see alignment E=1.9e-12 PF08448: PAS_4" amino acids 360 to 464 (105 residues), 34.1 bits, see alignment E=8.4e-12 amino acids 477 to 586 (110 residues), 37.4 bits, see alignment E=8.1e-13 PF13426: PAS_9" amino acids 362 to 461 (100 residues), 34 bits, see alignment E=8.7e-12 amino acids 480 to 583 (104 residues), 62.3 bits, see alignment E=1.4e-20 amino acids 607 to 708 (102 residues), 46.8 bits, see alignment E=9e-16 PF08447: PAS_3" amino acids 493 to 576 (84 residues), 33.7 bits, see alignment E=1.1e-11 PF13188: PAS_8" amino acids 597 to 649 (53 residues), 32.3 bits, see alignment 2e-11 PF02518: HATPase_c" amino acids 892 to 997 (106 residues), 94.6 bits, see alignment E=1.6e-30

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QFN2 at UniProt or InterPro

Protein Sequence (1013 amino acids)

>Dsui_2806 PAS domain S-box (Dechlorosoma suillum PS)
MSAGDRVETAFVPTARHWLVAIIGFVLLLAGGLYRSHQVLFGAARETAEQQLQAVAALKS
QEIQRWIEDRLIFLSQPPGSVMSQHFARLLQQPGDARAAAGLRQRFRYLQQTIPEISAIG
LHDLAGRSYLADPADDHLWDDTLHQEAVQALLESRRPRLVDFHRKAGREGEVVLDLLVPL
FAEGETGRLIGYALFEIDPARVLYPMVSQWPVPSATGESLLVRRDGDEVLFLSPLGRQAG
APLNLRLPLDTPGLISGMALHGVGEALAGRDYRGLAVLGVVLPVGQTDWLLVAKMDDSEI
YREARRNFAWLTAAGVVLMAVLLLLGRVFSAALQAREQEARFRLLAESGSDVVWLYELAS
RRFAYVSPSVQAMRGITVDEALQQTMADLLTPECHQHLDGELERWIAAVDTGQEAAASRH
YELVQPRKDGSLIQTEAVMTLITDAQGRVTHIQGISRDITERKRAEAELRKFLLSAEQSP
VSIVITNLAAEIEYVNEAFVRTAGYSREEVLGQNPRILQSGRTPRSSYEEMWRCLSRGEG
WRGELFNRRKDGSEYLEDASINPIRQPDGSITHYLAVKEDITERRATEAALAESEDKFRT
IYDTIGDAIFVHDVASGSILDVNGGACRMYGYSRKELLSLDVQGITADDPAFPPQAARDY
MRRVQEEGPQSFEWMARGSSGRQFWVLVNLQIFRLSGGQRVLAVVRDIDGRKRAEQELQQ
ALAEAKALNQRLAEAQSQLLQSEKMASIGQLAAGVAHEMNNPIGFVYSNLGTLDHYLREI
FAIIAAYEAADSGPCRDCRQLESARQLKLEKDFDFLRSDIVQLLAESRDGLERVAKIARD
LKDFSRAGEAESQWADLHQGLDSTLNIVWNELKYKCTVHKEYGELPLVWCEPSQINQVFM
NLLVNAAQAIPKKGDIWLRTGRRGDEVFVAVSDSGCGIAPEYLHRLFEPFFTTKPVGKGT
GLGLSLAYSIVQKHQGRLEVESEPGRGSTFTVWLPIEARPRPEEGTEAASAPR