Protein Info for Dsui_2802 in Dechlorosoma suillum PS

Annotation: flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF03486: HI0933_like" amino acids 10 to 405 (396 residues), 245.9 bits, see alignment E=1.9e-76 PF00070: Pyr_redox" amino acids 10 to 46 (37 residues), 25.9 bits, see alignment 5.3e-09 TIGR00275: flavoprotein, HI0933 family" amino acids 11 to 404 (394 residues), 294.1 bits, see alignment E=1.5e-91 PF00890: FAD_binding_2" amino acids 11 to 59 (49 residues), 27.5 bits, see alignment 8.6e-10 PF01494: FAD_binding_3" amino acids 11 to 41 (31 residues), 26.6 bits, see alignment (E = 1.6e-09) PF13450: NAD_binding_8" amino acids 13 to 44 (32 residues), 27.5 bits, see alignment (E = 1.5e-09) TIGR03862: flavoprotein, TIGR03862 family" amino acids 31 to 411 (381 residues), 555.8 bits, see alignment E=4.2e-171 PF22780: HI0933_like_1st" amino acids 197 to 353 (157 residues), 89.6 bits, see alignment E=9.8e-29

Best Hits

KEGG orthology group: K07007, (no description) (inferred from 71% identity to reh:H16_A0973)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QFM8 at UniProt or InterPro

Protein Sequence (422 amino acids)

>Dsui_2802 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family (Dechlorosoma suillum PS)
MTPMPSPPPHVAVIGGGPAGLMAAEVLARDGAQVTVYEAMPSVGRKFLMAGKGGMNITHS
EDFAAFQERYGSARERLAPLLQEFGPEALRAWIHGLGVDTFVGTSGRVFPTEMKAAPLLR
AWLHRLRQEGVAFQVRHRWLGWSADGALRFATPAGEIEVKPAATVLALGGGSWAKLGSDG
AWVPTLARAGIAVAPLRPANCGFDAAWSPHFREHFAGQPVKPVVAACSGPDGRAWRRQGE
FVVSADGVEGGLIYALSAPLRDLIERDGSATLSLDLLPGHSAERVLAEVRRPRGSRSLSS
HLQSRLGLKGVKMGLLRECLDKERFQDEAALAAAIKALPLRLVAPRPLDEAISSAGGVRL
EELDEQLMLRQRPGLFCAGEMLDWEAPTGGYLLTACFCTGRKAGMGAGQWLKLRQRAAST
TT