Protein Info for Dsui_2703 in Dechlorosoma suillum PS

Annotation: chromosome segregation protein SMC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1169 TIGR02168: chromosome segregation protein SMC" amino acids 2 to 1157 (1156 residues), 1056.2 bits, see alignment E=0 PF02463: SMC_N" amino acids 3 to 1150 (1148 residues), 216.9 bits, see alignment E=4.9e-68 PF13476: AAA_23" amino acids 5 to 226 (222 residues), 52.3 bits, see alignment E=2.4e-17 PF06470: SMC_hinge" amino acids 523 to 617 (95 residues), 31.1 bits, see alignment E=5.4e-11 PF13304: AAA_21" amino acids 990 to 1129 (140 residues), 31.9 bits, see alignment E=2.8e-11

Best Hits

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QPF2 at UniProt or InterPro

Protein Sequence (1169 amino acids)

>Dsui_2703 chromosome segregation protein SMC (Dechlorosoma suillum PS)
MRLTKLKLAGFKSFVDPTMVALPGQLVGVVGPNGCGKSNIMDAVRWVLGESKASELRGES
MQDVIFNGSSNRKPVSRASVELIFDNSLGRAMGQWSQYAELSVKRVLTRSGQSDYLINNI
KVRRKDITDLFLGTGLGPRAYAIIGQGMISRIIEAKPDELRVFLEEAAGVTRYKERRKET
EGRLADTRENLLRVEDIRLELAGQMERLEAQAAVARQYHQLNDELTLKQQVLWVLRRNEA
KAEQQRFAMEIERAGTDLEGQTAALRDIEAQLEASREAHFAASDGVHQAQSDLFAVNADV
ARLETEIRHQRESGVQLESRLAQLEGEQQHWQEQAERLDMDEERWRELQLVAEGRQEQAQ
MKLEARQERLPMAEEAQAAAQEALNQQRAEMAKVEQALQVEQTHRSHAERTLQSIAQRRD
RMEQERESLADPDTSELDLKTEELAEQQERLIALQDKLGAAQGELPQLEARRRELLEEVQ
AAVKDVADVRARRAALEQLQERVQSGGKVGEWLRRHGLESRTPLWKRLEVDAGWEDAVEA
VLRERLNAVSLEDPVALAALVDDKPAGKLTLLLSGAAEAPAGGLLGRIRCHEPALAGVLA
DWLHGIDCVDSMEAALQRRASLAPGQLLVTREGHLLSRHSLTLFAPDSAEHGLLERQREI
EALAAALDDKQLAVETAQARLAEVEERIAAGQSDSQNLRRRTQEQQDRIHTLQMEVMRQN
QILERIRERHAQIEQAAAELAAEEEVEQERLFIADEAIAQQRENLDALHARFAGVRARLE
EADRALREEREALANVEREHREAQFSLREAEGKLAEVANNRVMSQRQLQRIADDLAQCRQ
TRENLQVEILEPKLQEALEQRVLREQALAAQREAMENATQALRQLEEQRLKIEQGLNPMR
DRVGELRLKEQAAALNVEQLTAQLLEAGANEEVLAEQAQAFAGTKASSLQSSIGSLQKAI
LELGAVNLAALEELESATQRKQFLDDQAEDLNTAMETLENAIRRIDKETRDLLQATYDTV
NRHFGELFPTLFGGGEARLVMTGDEILDAGVQITAQPPGKKNATIHLLSGGEKALTAIAL
VFAMFQLNPAPFCLLDEVDAPLDDSNTERFAEMVKRMSANTQFLFISHNKIAMEMAQQLV
GVTMQESGVSRIVEVDIAEALRMREQVAA