Protein Info for Dsui_2687 in Dechlorosoma suillum PS

Annotation: RIP metalloprotease RseP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 37 to 53 (17 residues), see Phobius details amino acids 99 to 121 (23 residues), see Phobius details amino acids 391 to 413 (23 residues), see Phobius details amino acids 439 to 458 (20 residues), see Phobius details TIGR00054: RIP metalloprotease RseP" amino acids 3 to 464 (462 residues), 366.9 bits, see alignment E=6.7e-114 PF02163: Peptidase_M50" amino acids 10 to 451 (442 residues), 233.2 bits, see alignment E=4.9e-73 PF13180: PDZ_2" amino acids 224 to 299 (76 residues), 37.5 bits, see alignment E=4.8e-13 PF17820: PDZ_6" amino acids 240 to 290 (51 residues), 44.6 bits, see alignment 2e-15 PF00595: PDZ" amino acids 240 to 288 (49 residues), 27.4 bits, see alignment 7.4e-10

Best Hits

Predicted SEED Role

"Membrane-associated zinc metalloprotease" in subsystem Sex pheromones in Enterococcus faecalis and other Firmicutes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QPD6 at UniProt or InterPro

Protein Sequence (466 amino acids)

>Dsui_2687 RIP metalloprotease RseP (Dechlorosoma suillum PS)
MSNFLFYLAAFAVVLGILIVVHELGHYWVARLCGVKVLRFSIGFGRPVFSLFSGADRTEW
AVGAFPLGGYVKMLDEREAPVAAQELHRAFNVQPVGKRMAIVAAGPLANLLLAVLIYWGL
FYSGTEELRPILGAPPAASAAAEAGIQNGEVVVRVDGRPVQTWQDFRWELLQSSVNKSAG
AEGGEPDPGYVSIEVQDARQQIVFRRLNLAPLREQGYEGDPLGLLGVNFFRPQLAPVFGK
VTPGSPAEAAGLLSGDRVLAVDGVAIEFWSDVVQKIRNAPDQPLRLSILRDDARLEISVV
PEGYGDRGARIGRIGVGVRDAGPSRDELTVTVRYDVLTALSKAVEETWEKSSFSLVMMGK
MLTGEVSWRNLSGPVTIADYAGQSARMGIDYYLKFLALVSISLGILNLLPVPVLDGGHLM
YHMIEIIKRGPVSERFMEIGQQIGLALLLLLMAFAFYNDINRLISG