Protein Info for Dsui_2597 in Dechlorosoma suillum PS

Annotation: tyrosine recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 PF13495: Phage_int_SAM_4" amino acids 9 to 88 (80 residues), 27.6 bits, see alignment E=4.6e-10 PF02899: Phage_int_SAM_1" amino acids 9 to 86 (78 residues), 45.1 bits, see alignment E=1.6e-15 TIGR02225: tyrosine recombinase XerD" amino acids 10 to 303 (294 residues), 345.5 bits, see alignment E=1.3e-107 PF00589: Phage_integrase" amino acids 112 to 291 (180 residues), 158.7 bits, see alignment E=1.8e-50

Best Hits

KEGG orthology group: K04763, integrase/recombinase XerD (inferred from 54% identity to slt:Slit_2734)

Predicted SEED Role

"Tyrosine recombinase XerD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QNQ4 at UniProt or InterPro

Protein Sequence (304 amino acids)

>Dsui_2597 tyrosine recombinase XerD (Dechlorosoma suillum PS)
MLLANISLIEEFINTVWLQNGLAQNTLSAYRSDLVQFAKWLKVPLSAAGEVEISNYLVHL
YSQPIRPKPSSQRRLISVLRRFYGWLFEGHRIQKNPMLTMELPSLGVRLPKVLAMAQVEA
LLEAPDTSTALGLRDRALLEVLYATGFRVSELVGLTLTQLNLDMGVVRTIGKGNKERLVP
LGEISSDWLVRYLAESRPVLLKGRSSDGLFITGHQKKDNNDARMTRQMAWLLIKKYGELV
GIPRDRISPHVLRHAFATHLLNCGADLRIVQLLLGHADISTTQIYTHVARERLKELHAKH
HPRG