Protein Info for Dsui_2587 in Dechlorosoma suillum PS

Annotation: type IV secretory pathway, VirB10 component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 transmembrane" amino acids 16 to 37 (22 residues), see Phobius details PF03743: TrbI" amino acids 249 to 433 (185 residues), 140.4 bits, see alignment E=3.3e-45

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QNP4 at UniProt or InterPro

Protein Sequence (441 amino acids)

>Dsui_2587 type IV secretory pathway, VirB10 component (Dechlorosoma suillum PS)
MAAPLPSRIPKANRQLIQYFLWGLGIACAIVLAWRFVSGDTIEHQQQVAQETKQRDAINQ
SAQGTPAAIAAIYDTQFNAPNNSVATPPAPAERTSPGATPANAPATEPNPRLRLPSDRPS
TPGDEFEDTPTSPAHGRALTPQRIREQARASDLASYEDTNDGIQPHQTPVNSLMDQLKNI
QQGAGGTQAQVADYLRNLQTSQAATGRPAAPTASGKSTDLDWLNGQGSIANADEEPLRPV
MSAPGEYVLHEGTPIRIVLQTDISSDLPGDFIAMVTRDVYDSRGYGHKLISKGMMLRGKY
NSEISAGQDRLLFAFHTMSFPSGARLRMKGMPGSDRGGAAGAEAEVDRHFWRTFGGSLAV
GAVTMVAGRSSGNGSNVTINMGGSNTSNGTAVATQALSDVVRQMLQRNANIKDTLSLHKG
EQLMIVTNREMDLPPSMTGVQ