Protein Info for Dsui_2413 in Dechlorosoma suillum PS

Annotation: DNA repair protein RadA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 457 TIGR00416: DNA repair protein RadA" amino acids 1 to 450 (450 residues), 645.7 bits, see alignment E=1.9e-198 PF18073: Zn_ribbon_LapB" amino acids 8 to 35 (28 residues), 44.4 bits, see alignment (E = 4.3e-15) PF13481: AAA_25" amino acids 68 to 222 (155 residues), 67.5 bits, see alignment E=5.2e-22 PF06745: ATPase" amino acids 74 to 147 (74 residues), 39.7 bits, see alignment E=1.4e-13 amino acids 157 to 257 (101 residues), 27.7 bits, see alignment E=7.1e-10 PF13401: AAA_22" amino acids 92 to 216 (125 residues), 29.6 bits, see alignment E=3.2e-10 PF13541: ChlI" amino acids 351 to 429 (79 residues), 31.2 bits, see alignment E=7e-11

Best Hits

Swiss-Prot: 58% identical to RADA_HAEIN: DNA repair protein RadA (radA) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K04485, DNA repair protein RadA/Sms (inferred from 82% identity to dar:Daro_1987)

Predicted SEED Role

"DNA repair protein RadA" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QLY3 at UniProt or InterPro

Protein Sequence (457 amino acids)

>Dsui_2413 DNA repair protein RadA (Dechlorosoma suillum PS)
MAKTKSIYTCTECGAQSPKWQGQCSACNAWNTLVETVAEAGGKGSGHRFESLAPGTPRLQ
ALSEIETREAARLPTGLSEFDRALGGGLVAGGVVLIGGDPGIGKSTLLLQALAALAPQHK
VLYVSGEESGQQVALRARRLQLDVERLPLLAEINLERILGVVQTEKPQVAVIDSIQTLWS
DQLTSAPGSVAQVRECAAQLTRLAKQTGVTVILVGHVTKEGALAGPRVLEHIVDTVLYFE
GDTHSSFRLIRAVKNRYGAVNELGVFGMTDKGLKGVSNPSALFLSQHGQEVAGSCVLVTQ
EGTRPLLVEIQALVDTTMGGSPRRLSVGLEQNRLAMLLAVLHRHAGIGCFDQDVFVNAVG
GVKISEPAADLPVLLAIISSLKNRPLPEKLVVFGEVGLAGEIRPAPRGQERLKEAAKLGF
TRALVPEANKPRQPLPGLEVVAVSRIEQAVERLRDWE