Protein Info for Dsui_2343 in Dechlorosoma suillum PS

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00440: TetR_N" amino acids 7 to 53 (47 residues), 46.7 bits, see alignment E=2.1e-16 PF17940: TetR_C_31" amino acids 83 to 169 (87 residues), 29 bits, see alignment E=9.8e-11

Best Hits

Predicted SEED Role

"possible transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QL46 at UniProt or InterPro

Protein Sequence (182 amino acids)

>Dsui_2343 transcriptional regulator (Dechlorosoma suillum PS)
MSVKQRLLAAGVTLLHEQGLAALTQPRIAKAAGVSQSHLTYYFPTRNELLLAIAEQSVND
ALTRQLGSPEADPAQALSTAMRFLPRVRMLLGLVAAADQEPSLREAVSRLVEHVRQSIAQ
LLSHLGYAPEAPQVLVFHAAIVGLAVMNLGRQSPQSEAELAVGLRQLLALLPHPTAPGSP
AP