Protein Info for Dsui_2325 in Dechlorosoma suillum PS

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 134 PF02810: SEC-C" amino acids 10 to 23 (14 residues), 24.8 bits, see alignment (E = 1.6e-09) PF17775: YchJ_M-like" amino acids 33 to 130 (98 residues), 85.7 bits, see alignment E=3.4e-28

Best Hits

Swiss-Prot: 52% identical to Y3559_CHRVO: UPF0225 protein CV_3559 (CV_3559) from Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)

KEGG orthology group: K09858, SEC-C motif domain protein (inferred from 54% identity to rfr:Rfer_3964)

Predicted SEED Role

"UPF0225 protein YchJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QL29 at UniProt or InterPro

Protein Sequence (134 amino acids)

>Dsui_2325 hypothetical protein (Dechlorosoma suillum PS)
MSKPAPVRTCPCGSGQPYARCCGVYHGGQPAGTPEALMRSRYSAYALGLSDYLVATWAAE
TCPPDLDAHTPPQPKWLELTVHEASQEGDQDGCWGRVRFTARGKDNGRAFRMGETSRFQR
RDGRWFYVDGEVTL