Protein Info for Dsui_2289 in Dechlorosoma suillum PS

Annotation: qaraquat-inducible protein B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 523 transmembrane" amino acids 24 to 45 (22 residues), see Phobius details amino acids 119 to 135 (17 residues), see Phobius details PF02470: MlaD" amino acids 48 to 139 (92 residues), 55 bits, see alignment E=4.1e-19 amino acids 163 to 223 (61 residues), 35.8 bits, see alignment E=3.8e-13 amino acids 294 to 398 (105 residues), 46.5 bits, see alignment E=1.8e-16

Best Hits

KEGG orthology group: K06192, paraquat-inducible protein B (inferred from 47% identity to rme:Rmet_4088)

Predicted SEED Role

"Paraquat-inducible protein B" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QKZ3 at UniProt or InterPro

Protein Sequence (523 amino acids)

>Dsui_2289 qaraquat-inducible protein B (Dechlorosoma suillum PS)
MPDDTPLPAAETVRVTPPRRRPTLVWIIPLLAVALSLGLGIKALLERGPQITLQFARAEG
LEANKTRLKYKDVDIGTVTDITLSPDRSSVQVKVQVNNSAKGLLVEDSRFWVVRPRVTVG
GVSGLATLLSGVHIAIDPGQSGSDAREFVGLEEPPAITSDTRGSQFKLSSDTLGSLDIGA
PVYYRRIPVGRVIGYAMQPDGRGVDVQIFVDAPYDRFVSPNSRFWHASGVDVAMDADGVK
LNMQSVLSLMLGGVAFSSPEGEPGETPAAAPAASTFVLHPDQATAQRIPDSSYQKYVLIF
RESVRGLTVGAPVDFRGITAGEVSRIDLDFDQTTKNFSMAVEIKLYPERLSRRSRGMGNA
EPSRKDIREVLNAMVARGFRAQLRTGNIVSGQRYVALDYFPNAKPAAMRWGKGIAELPTQ
PGSLDSLQDQLETIATTLQHTLQHTDKLITRLDREVVPELADTLRDARKALDQANKVLAS
DAPMQQEVRDTLREVGRAASAVRNLADLLERQPEALLKGKKDD