Protein Info for Dsui_2240 in Dechlorosoma suillum PS

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1279 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 263 to 281 (19 residues), see Phobius details amino acids 295 to 316 (22 residues), see Phobius details PF00672: HAMP" amino acids 316 to 365 (50 residues), 22.5 bits, see alignment (E = 4.6e-08) PF00989: PAS" amino acids 405 to 512 (108 residues), 24 bits, see alignment E=1.3e-08 PF13188: PAS_8" amino acids 405 to 452 (48 residues), 24.5 bits, see alignment (E = 7.7e-09) TIGR00229: PAS domain S-box protein" amino acids 408 to 517 (110 residues), 40.8 bits, see alignment E=1.1e-14 PF13426: PAS_9" amino acids 415 to 513 (99 residues), 31.6 bits, see alignment 6.9e-11 PF00512: HisKA" amino acids 535 to 600 (66 residues), 79.4 bits, see alignment 6.9e-26 PF02518: HATPase_c" amino acids 647 to 761 (115 residues), 90.7 bits, see alignment E=3.5e-29 PF00072: Response_reg" amino acids 783 to 901 (119 residues), 66.9 bits, see alignment E=7e-22 amino acids 931 to 1041 (111 residues), 105.1 bits, see alignment E=9.8e-34 PF01627: Hpt" amino acids 1107 to 1176 (70 residues), 43.9 bits, see alignment 9.6e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QKC0 at UniProt or InterPro

Protein Sequence (1279 amino acids)

>Dsui_2240 PAS domain S-box (Dechlorosoma suillum PS)
MGNLATRMRRKIESLPLKIKAALFCALIFALGMGSLAYYVADALRRDSVVLIGQEQKTGA
DFLARTLEAELRLRLDVIDGLARHLVVQSLNSPRQIQTFLNEQTVASRIFSRDIYFIAAN
GIRTAEYPQRGHVGTPYNDSSYFISIRDTRKPAIRVWFGRFAKKPVLLVAVPVIAADGTF
LGALCGADVIAPGSPLHLTDEVHNGQSGGFHVYALDQGIFAASTDPTRVLEKLPAPGINP
LLDRRLKGYTGPGQTVDSKGLEVVSAAAMVPTANWMVVSYLPTREAFAPQERATMRIYSG
AALITLLVALLVWLGVRRSLAPLERAARQIGETGAGHIPLEPVEVQGSGEIRMLLQNFNL
LQQHIAAQNETIRQERDHLEVLVEERTAELVGLAKSLRDANQEQQAVFDAARIGIILTRD
RIIRRCNRTIEEILGYEPGEILEQSTRIWYPDEATFLAVGERVREGLTRHGYFREELELV
RKDGSRFWGRIMAQVIDRNAPEKGMAGTVEDIGEERRILAEMAQAKALAEAAAQAKADFL
ANMSHEIRTPMNAVIGMTHLALKTDLDERQREYLRKIQHSSQHLLGIINDILDFSKSEAG
KLHIEQIDFDLEKVLEDVSSLMSERATSKGLEFVIEMADEVPRHLVGDPLRIGQVLINYA
SNAVKFTERGEVAIHVGLEEDQGQEVLLRFAVHDTGIGIKAGELPTLFNSFQQADSSTTR
KYGGTGLGLVIAKRLAELMGGQVGAESEPGRGSTFWFTARLGRSSNARHRAPPRPDLRTR
RLLVVDDHDHARDVVCDMLRSMSFQVSDTDSGNRCLAELQRASAAGEPYDIVFLDWQMPE
MDGLATAREIRRLELPQPPLVLMITAYGRDELARSAGESGLQGIEEILIKPVSPSQLFNT
VMRILDHEDGPHSAADPEALPDLAPLAGLRVLLVEDNQLNQEVASEFLAGANMVVDVADD
GASALEKVRQQRYDVILMDMQMPVMDGIAATREIRRQFPAAVLPILAMTANAMEQDRERC
LAAGMNDHIAKPVDPRDLLGKLLKWLAPGAPLVAPQAAAPLPGTVTPTPPVAAPAKADRQ
PFAGIPGLDATLGLHQALDREGLYLRLMDKFVSGQRDAPQRLARAIDAGDWVGAEREAHT
LKGVSAQIGAMPLRDLAEGLEHAIRQRDPPDLLQDLLGKIADSLPPLVDAIAAVLATQEV
PAAKATVNWMQVEEVCARLAQQLANDDFACEKLLDEHEALLHGALGEDFPPLARAVRDFD
FTQAQARLQALAASHRLKL