Protein Info for Dsui_2120 in Dechlorosoma suillum PS

Annotation: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 transmembrane" amino acids 40 to 63 (24 residues), see Phobius details amino acids 96 to 122 (27 residues), see Phobius details amino acids 142 to 169 (28 residues), see Phobius details amino acids 210 to 234 (25 residues), see Phobius details amino acids 253 to 272 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 110 to 268 (159 residues), 59.3 bits, see alignment E=2.1e-20

Best Hits

KEGG orthology group: None (inferred from 76% identity to azo:azo2393)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QJ72 at UniProt or InterPro

Protein Sequence (284 amino acids)

>Dsui_2120 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component (Dechlorosoma suillum PS)
MSESLALEGEALASPLVDKTPRQGRSVPHSGLFPALLSRLPAWEAVALWAVLFLAWQGST
YFIDQNANPLLPGPRIVAEALWESLPELWKGTVSSFFILAPGYLLAVAAGVALGLVAGIV
PGVGRGLFPFAKVAAPIPPTVYIPYAIAVLPTFHLSATFVVFIGAFWPVFQNSAAGALAV
EGRHRDNARVLGFSRLETLVKVVFPASLPHIFSGAAVGLGFSFILLTVAELFGANAGLGR
FVQYYADFADYPRMVAGILYTGLVTWLAMTGLDKLRHRALFWVR