Protein Info for Dsui_2018 in Dechlorosoma suillum PS

Annotation: Mu transposase/integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 884 PF09299: Mu-transpos_C" amino acids 723 to 777 (55 residues), 42.6 bits, see alignment 2.4e-15

Best Hits

Predicted SEED Role

"FIG01240914: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QIH7 at UniProt or InterPro

Protein Sequence (884 amino acids)

>Dsui_2018 Mu transposase/integrase (Dechlorosoma suillum PS)
MLSEEQLQERFILQNIPLNGRKIVQAIRRGDPSRRVGGGKFNVACRYSSQKMGCVIQAES
HKNELPYLYTWDHDVETEEFYDQPSQIKLRYKGAGGRHCSHLSTPDYFLIQKGWMGWVEC
KTEEELLKREASGSELFLRSPDGKWRCPAGENFANQYGLGFQVLSSKEIDWILVRNIGFL
SDYLDTACPAPDPLQVTLIKDRLKGVHWILLEALLSQADIGADTVYKMVADGMLHVDLTQ
ELLTEPQYTTVCTDIMSLAAYQGQRRLQTAITMPDIGAIELKAGESFLWDGQPWKILNVG
VTEIFVVDEQKTCSTLSREVFDGLVTQGIITGIERSIADCHQRAAEQVRHAAPIDLEEAN
RRYQVLEHPESSVIPARTLRSWRAKQREGVLVYGNGYVGLLPRISARGNRNRKIPALVIE
LMHEVINELVLSSEALLISIAYGELVNRCEDKGVQAPSEKTFSREIKRLSEEVVKRAREG
DKAAYAISEFHWVIDQSTPRHGERPFEIGHIDHTELDIQLVDSRTGANLGKPWLTVLIDA
YSRVILGFYLTFDSPSYRSCMAVIRDALRRHGRITKTIVMDQGKDFESAYVESLLARIEC
HKKSRPASKSRFGSVIERFFGVANQRLIHNLVGNNQALQKPRSMSPSHDPRKLAVWTLPE
FTNLFERFIDDAYANLIHPTLGISPREMMARGLALYGNRPHLLIPYTPDLILQCLPSTRS
GNAMVRQGRGIKIRGILYWHAALRDSEITGTQVPVRYDPFDISRAYAYVKGEWHLCRSEH
ASVFERRTEAEIQVITQEIRAHHANYGIRRQINGADMAAFVIKEKKNEALLRQQRRDAER
REEESDVAPPLPELLAPSDPHSPLTFEDQWASVEFSFENFGELK