Protein Info for Dsui_2002 in Dechlorosoma suillum PS

Annotation: TIGR00645 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 174 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 59 to 81 (23 residues), see Phobius details amino acids 111 to 130 (20 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details TIGR00645: TIGR00645 family protein" amino acids 7 to 165 (159 residues), 197.4 bits, see alignment E=1e-62 PF03350: UPF0114" amino acids 13 to 129 (117 residues), 127.1 bits, see alignment E=2.2e-41

Best Hits

Swiss-Prot: 58% identical to Y1258_PASMU: UPF0114 protein PM1258 (PM1258) from Pasteurella multocida (strain Pm70)

KEGG orthology group: None (inferred from 71% identity to dar:Daro_1628)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QIG2 at UniProt or InterPro

Protein Sequence (174 amino acids)

>Dsui_2002 TIGR00645 family protein (Dechlorosoma suillum PS)
MNSKFQNNMERLIFSSRWLQAPLYLGLIVAQGIYVVQFMMELSHLVADIAHLDEAKTMLI
VLGLIDVVMIANLLIMVIIGGYETFVSKLDIEGHPDQPEWLSHVNAGVLKVKLATALIGI
SSIHLLKSFINAAQLDDRVLGWQVGIHAVFVVSAFMMAVTDKVMNQTLNLQSKH