Protein Info for Dsui_1883 in Dechlorosoma suillum PS

Annotation: ATPase component of ABC transporters with duplicated ATPase domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 640 PF00005: ABC_tran" amino acids 19 to 187 (169 residues), 94.8 bits, see alignment E=3.2e-30 amino acids 338 to 471 (134 residues), 83.2 bits, see alignment E=1.3e-26 PF12848: ABC_tran_Xtn" amino acids 226 to 301 (76 residues), 29.9 bits, see alignment E=2.1e-10 PF16326: ABC_tran_CTD" amino acids 567 to 635 (69 residues), 73.5 bits, see alignment E=5.9e-24

Best Hits

Swiss-Prot: 48% identical to UUP1_HAEIN: ABC transporter ATP-binding protein uup-1 (uup-A) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 75% identity to app:CAP2UW1_2445)

Predicted SEED Role

"COG0488: ATPase components of ABC transporters with duplicated ATPase domains" in subsystem Folate Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QHB3 at UniProt or InterPro

Protein Sequence (640 amino acids)

>Dsui_1883 ATPase component of ABC transporters with duplicated ATPase domain (Dechlorosoma suillum PS)
MPYLQLKSACLAFGHVPLLDHADFQLDPGERVALIGRNGCGKSSLLKALAGQGGLDDGEV
WRQPGARIGYVPQEPPFDPEQSVFQAVVGGMGDTSALLAEYHEVSHRLADEGADHEVLLA
RLHQLQTDLEARGAWAVNAQAEAAIQRFSLDPEARVGGLSGGQKKRLALAQALAVAPEVL
LLDEPTNHLDVGAIAWLENLLLEANVTLLFITHDRAFLNRLATRIVELDRGQLVSFPGNF
AAYQERKERMLADEAVVNAKFDKFLAQEEVWIRKGVEARRTRNEGRVLRLEQLRRERAAR
RERQGKVELALDSGEKSGKLVAELTHVTKRYGERTIVRDFSTRLMRGDKIGLIGPNGAGK
TTLLRLILGELQPDEGSVRQGTKVEVAYFDQFRSQLDEEAALADVISPGSDYVEIGNEKK
HVISYLGDFLFAPQRARSPVKSLSGGERNRLLLARLFARPANVLVLDEPTNDLDIETLEL
LEQLLQDYPGTLFLVSHDRAFLDNVVTQTIAAEGDGVWHEYAGGYSDWFAYQQRRQAEES
QAARAQAREEKAAAPKEDKAAKAKPVKLSYKENKELEALPDRIAALEAEQAGLSQRLEDP
GLYQRDPQEAQRCSARLGEIDEELLLLLERWEELEAKSKG