Protein Info for Dsui_1773 in Dechlorosoma suillum PS

Annotation: type I secretion system ABC transporter, PrtD family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 557 transmembrane" amino acids 23 to 46 (24 residues), see Phobius details amino acids 58 to 80 (23 residues), see Phobius details amino acids 131 to 178 (48 residues), see Phobius details amino acids 255 to 281 (27 residues), see Phobius details TIGR01842: type I secretion system ATPase" amino acids 19 to 545 (527 residues), 616.6 bits, see alignment E=1.9e-189 PF00664: ABC_membrane" amino acids 24 to 282 (259 residues), 47.9 bits, see alignment E=1.5e-16 PF00005: ABC_tran" amino acids 348 to 495 (148 residues), 99.1 bits, see alignment E=3.4e-32

Best Hits

KEGG orthology group: None (inferred from 49% identity to paa:Paes_2205)

Predicted SEED Role

"type I secretion system ATPase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QG85 at UniProt or InterPro

Protein Sequence (557 amino acids)

>Dsui_1773 type I secretion system ABC transporter, PrtD family (Dechlorosoma suillum PS)
MKKPEFFSRSVLANALWGFRREFMVVGLFSFVSNLLMVVPTLYMLQVFDRVMISQSELTL
ISLTIIAFVLLGIMGFAEWVRSWLLVRLSVRLDEYLSTGVFQATFESVLNRTGTHVQSFG
DLTGIRQFLTGPAIFAFFDAPWTIVYIGVLFILHPLLGFSAIVFCLLLAGVTWATHYYTH
EPLEAALESSGQALGYVQAKSRHCEVVESLGMVENLRRRWREKQQRALGLNHQAQEWSHR
LQEISKLVRYSQQSLIIAISSLLVIDGRLTPGAMVAANLLMSRTLAPIDMMVNTWRNFIT
ARVSFLRLEKLLERGGRPSSLDDAVPERAELLVRGLTATASQRAKPILKHLNASFSSGEV
VVVVGPSGSGKSTFARCLVGIWPERQGEVLLDGRDVEAWDRHLLGPRIGYLPQEIELFEG
SIAENIARFGEVDPEQVVRAAKRAGIHEMVLRHPKGYDTQIGESGHLLSAGQRQRIGLAR
AMYGDPLLIVLDEPNAHLDDAGEGCLLRAVRELKAEGRLVVMISHRNNATAAADRILKLE
GGLLVAEFRRQELAVAS