Protein Info for Dsui_1604 in Dechlorosoma suillum PS

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 45 to 63 (19 residues), see Phobius details amino acids 71 to 98 (28 residues), see Phobius details amino acids 111 to 130 (20 residues), see Phobius details amino acids 136 to 161 (26 residues), see Phobius details amino acids 168 to 190 (23 residues), see Phobius details PF01184: Gpr1_Fun34_YaaH" amino acids 12 to 191 (180 residues), 55.3 bits, see alignment E=3.6e-19

Best Hits

KEGG orthology group: K07034, (no description) (inferred from 78% identity to dar:Daro_0229)

Predicted SEED Role

"Transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QPT4 at UniProt or InterPro

Protein Sequence (210 amino acids)

>Dsui_1604 putative membrane protein (Dechlorosoma suillum PS)
MQQQAQVMETKIVMSDPTALGVFGLATVTFVAASAKLGWTSGVTYLIPWALFLGSIAQIW
ASTIDFKKNNYFGAIVLGAYGLFWIAVAMHWAISLGWFGEIDAAKADPRQFAFACIAYFI
FSIFIMVAAFEANKVFAAILVLINVLLPSLALSMLGVAPAFFSGAAAWSELAIALLGFYA
AGSIFINSYFGRTLLPLGKPLGLIRKGPAK