Protein Info for Dsui_1393 in Dechlorosoma suillum PS

Annotation: type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 568 PF05157: MshEN" amino acids 67 to 154 (88 residues), 59 bits, see alignment E=3.8e-20 PF00437: T2SSE" amino acids 180 to 560 (381 residues), 420 bits, see alignment E=6.9e-130

Best Hits

KEGG orthology group: K02454, general secretion pathway protein E (inferred from 84% identity to app:CAP2UW1_0626)

Predicted SEED Role

"Type II secretion system protein E"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QN03 at UniProt or InterPro

Protein Sequence (568 amino acids)

>Dsui_1393 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB (Dechlorosoma suillum PS)
MNAPSPQRRPLGQILIAQGIISEDQLRIALLEQMKSNQPVGKLLVSLGFVSETTLREALS
ESLGKRSIDLSRAVIDPSALKLVPRELAKRHHILPLDFDAESHRLTLALADINDIVALDK
VRSQLNAELEIETLLAGESEIDRAIDQYYGYELSIDGILHEIETGEIDWKSLQSSSDEYS
QPVVRLIDAILADAVKRDASDVHFEPEANFLRIRYRIDGMLRQIRALHKSYWPAMAVRIK
VMSGMNIAETRAPQDGRINLVLSGRQVDFRVAAQPTIHGENVVLRILDRQKGIVPLEGLG
LAEDHLDLLKLMIARPEGIILVTGPTGSGKTTTLYSVLNHINSEGVNIMTLEDPVEYPMA
LVRQTSVAESAKLDFANGIRSMMRQDPDVILVGEIRDTDTAEMAFRAAMTGHQVYSTLHT
NSAIGAIPRLLDIGILPDLMAGNIIGIVAQRLVRRLCPGCKTPYQAEAHESRLLGIPAEG
PRPVIYHPCGCERCDFQGYRGRIAIMELLRMTPAMDELVARRATARDIRNEATRQGFRPL
ADDGLRRVLDGSTSLEELSRVVDLTDRM