Protein Info for Dsui_1228 in Dechlorosoma suillum PS

Annotation: response regulator containing a CheY-like receiver domain and an HD-GYP domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 29 to 30 (2 residues), see Phobius details amino acids 171 to 194 (24 residues), see Phobius details PF13487: HD_5" amino acids 215 to 380 (166 residues), 125.3 bits, see alignment E=2.3e-40 PF01966: HD" amino acids 228 to 348 (121 residues), 62.6 bits, see alignment E=4.2e-21

Best Hits

KEGG orthology group: None (inferred from 48% identity to gca:Galf_0920)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QLN8 at UniProt or InterPro

Protein Sequence (423 amino acids)

>Dsui_1228 response regulator containing a CheY-like receiver domain and an HD-GYP domain (Dechlorosoma suillum PS)
MTNIHHTVLGRLLLAWALVSLLLGGSAWYVATERIDDAVVALAQAESARFQAAELEAAEM
SAQQLDFLRQRALGFVRDHFVVIELYDRERRKVVEAVNPAHQDIEAGLKGSAHAFPMDGK
HHYEKHTILNNTVVQVLVPILDRERNIAGYFEGVFLVSPEEEARLRRDLNLILGLVLAAA
LITTVVLYPVILSLNRNVLRFSREVLRGNLEMASVLGAAIAQRDSDTSIHNYRVALYACR
LGEVTGVEGDAMRALIIGAFLHDVGKIGISDNILLKPGKLDAEEFRIMQTHVSLGVHIIA
PSPWLQAAREVVQFHHEKYDGSGYLQGLKGEEIPLNARIFAVVDVFDALTSRRPYKEPMT
CEAALAILHKDAGSHFDPRLVAAFAPVAAPLHAELSRLDEGAIQALLEERISRYFFAAFL
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