Protein Info for Dsui_1217 in Dechlorosoma suillum PS

Annotation: tyrosine recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 PF02899: Phage_int_SAM_1" amino acids 17 to 98 (82 residues), 61.8 bits, see alignment E=9.4e-21 TIGR02225: tyrosine recombinase XerD" amino acids 19 to 306 (288 residues), 368.8 bits, see alignment E=1e-114 PF13495: Phage_int_SAM_4" amino acids 20 to 97 (78 residues), 31.5 bits, see alignment E=3e-11 PF00589: Phage_integrase" amino acids 120 to 294 (175 residues), 177.2 bits, see alignment E=3.9e-56

Best Hits

Swiss-Prot: 59% identical to XERD_RALSO: Tyrosine recombinase XerD (xerD) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K04763, integrase/recombinase XerD (inferred from 74% identity to app:CAP2UW1_3059)

Predicted SEED Role

"Tyrosine recombinase XerD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QLM7 at UniProt or InterPro

Protein Sequence (307 amino acids)

>Dsui_1217 tyrosine recombinase XerD (Dechlorosoma suillum PS)
MTDAAPPTLAFSTQSEIDAFCDALWLEDGLSPNSLAAYRSDLQRYALWLQQQGRPPLAQA
GAADLAAFLADVAARMKSSSQARYLSSLRRFYRRLLAQNRISADPTLQTAMPVKASRLPK
VMSEAQVEALLAAPEIETPLGQRDRAMLETLYATGLRVSELVNLKLHEVSFDMGVARVFG
KGSKERLVPLGEVALDWLKSYLNDGRNALLDNRLSDFLFVTARGTAMTRQMFWTLVKKYA
LVAGMDPARLSPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKDLH
AVHHPRG