Protein Info for Dsui_1196 in Dechlorosoma suillum PS

Annotation: metalloprotein, YbeY/UPF0054 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 152 PF02130: YbeY" amino acids 25 to 142 (118 residues), 119.9 bits, see alignment E=3.5e-39 TIGR00043: rRNA maturation RNase YbeY" amino acids 44 to 144 (101 residues), 116.7 bits, see alignment E=2.8e-38

Best Hits

Swiss-Prot: 73% identical to YBEY_DECAR: Endoribonuclease YbeY (ybeY) from Dechloromonas aromatica (strain RCB)

KEGG orthology group: K07042, probable rRNA maturation factor (inferred from 73% identity to dar:Daro_3529)

Predicted SEED Role

"Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QKZ2 at UniProt or InterPro

Protein Sequence (152 amino acids)

>Dsui_1196 metalloprotein, YbeY/UPF0054 family (Dechlorosoma suillum PS)
MNQPSRRLNLSVQYACNREGLPCRDDFRAWARAALNVDGMKGGQVTIRLVEADEGQELNR
DYRGKDYATNVLSFPYEYEPVVMGDLVICHAVVAREAAEQGKPLAAHYAHLVVHGMLHLQ
GYDHEEEAAAEHMEALERDILAGLGYPDPYAA