Protein Info for Dsui_1127 in Dechlorosoma suillum PS

Annotation: site-specific recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 PF00589: Phage_integrase" amino acids 120 to 276 (157 residues), 90.7 bits, see alignment E=4.7e-30

Best Hits

KEGG orthology group: None (inferred from 56% identity to mei:Msip34_2844)

Predicted SEED Role

"Shufflon-specific DNA recombinase" in subsystem Type 4 conjugative transfer system, IncI1 type

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QK96 at UniProt or InterPro

Protein Sequence (389 amino acids)

>Dsui_1127 site-specific recombinase XerD (Dechlorosoma suillum PS)
MAHDTNPTLREALFMYCERISIHKKGHAQEKYRINLYCRYSIADLPIRNITSVDVATFRD
ERLAEINARTGRALSPATVRLDLALLSDLFRIAKNEWGICNDNPVANVRKPKLPPGRDRR
LAPREERMIMRHCSQRGAHEMKAIVQLALETAMRQGEILGVCWEHINLKSRIVHLPDTKN
GSKRDIPLSMEARDILAAQRVKLSGRVFSYTNNGLKSSWRSMIKRLNIPDLHFHDLRHEA
ISRLMERGVFNLMEVAAISGHKSLSMLKRYTHLRAQRLVRKLDAGANKGKAAVLSYLVPY
PAFIEPYESQVKVTFPDFDDLHVAGPCLNSAVQQAQDALLREILVLMRQGRPIPPPNNYL
ELLDESRLFHLDPLATYDSLADLAEGALV