Protein Info for Dsui_1009 in Dechlorosoma suillum PS

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1281 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 332 to 353 (22 residues), see Phobius details PF17201: Cache_3-Cache_2" amino acids 219 to 327 (109 residues), 46.9 bits, see alignment E=1.2e-15 PF17202: sCache_3_3" amino acids 219 to 328 (110 residues), 92.7 bits, see alignment E=9e-30 TIGR00229: PAS domain S-box protein" amino acids 544 to 666 (123 residues), 79.2 bits, see alignment E=1.5e-26 amino acids 672 to 789 (118 residues), 73.7 bits, see alignment E=7.2e-25 PF00989: PAS" amino acids 550 to 656 (107 residues), 40.6 bits, see alignment E=1.2e-13 amino acids 673 to 779 (107 residues), 42.6 bits, see alignment E=2.8e-14 PF08448: PAS_4" amino acids 556 to 662 (107 residues), 29.5 bits, see alignment E=3.8e-10 amino acids 678 to 782 (105 residues), 36.7 bits, see alignment E=2.2e-12 PF13426: PAS_9" amino acids 558 to 659 (102 residues), 46.9 bits, see alignment E=1.5e-15 amino acids 683 to 780 (98 residues), 51.1 bits, see alignment 7e-17 PF08447: PAS_3" amino acids 572 to 638 (67 residues), 31.9 bits, see alignment 6.6e-11 PF13188: PAS_8" amino acids 675 to 720 (46 residues), 25.2 bits, see alignment (E = 5.6e-09) PF00512: HisKA" amino acids 820 to 885 (66 residues), 68.9 bits, see alignment 1.6e-22 PF02518: HATPase_c" amino acids 932 to 1047 (116 residues), 99.3 bits, see alignment E=9.4e-32 PF00072: Response_reg" amino acids 1077 to 1188 (112 residues), 92.5 bits, see alignment E=9.9e-30

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QJI8 at UniProt or InterPro

Protein Sequence (1281 amino acids)

>Dsui_1009 PAS domain S-box (Dechlorosoma suillum PS)
MALHPHFLSRWQRAWRRSLHIRLVVLGLVPMLVTLPVIMAVLVVGGQRFDELLEANAHAH
LISTRNYLEQIRNRSGQQVLQQALSERLPQLLKAHRGNDPTLGKVLDVWAESAGLDYLIV
ATEDGQIIAASTDAVPGTRLPRSFVVRQVLTGLPVSAYERFDAEQLARLGSRFPARARVE
VAGAPKGEAETRGLLINAAAHLPLSGDYGDAILFGGILLNNNLALIDNIREVVFPVGTLP
GGDSGTATLFLDDIRVATNVQLANGQRALGTRASAEVNQAVLEEGGTWVRRARVVDSWQI
AGYQALLDGEGRRIGMIYSGFPETYYQNEKHLLLGGISLVLGLSMLLLTYVFLKKSRRLT
DRLQRIRDAMTDFGQGRTLARVGRMEEEDEIGQLAGHFDALLDALDAKEKARAHTEWVLR
KRMQELACLYEISRVTEDPALGLGEILERVVGLIPPGWRWPRQTFACIEFGGARYATPGH
PAATGGHRVTFRTPGGDQGTLTVLCQPDGEHDTALLPEERTLQESIAQRLGDAISRLQTR
SALREREDIFSAIAAQAPESICLIDAESGRFIEFNDMTCASLGYTREELAGLSIADLEAE
MDPQQVRQALAAVIRDGQHSTETRLRRKDGQVRDFWVSNRRVEMDGRLGCASVWRDITER
KEQARAMASEVSMRRALFEHSRDGLVLLTEDGAVAEANPAMAAMLGYTPEEMERLHVWDW
DAAIPREQITAMLRALSKGGEFFQTVHRHKDGRTFNVEVSASRVEWEGQAYVLCLHRDIT
FRLRLEQELEQHRHHLEELVHARTMELAEARDEAESASRAKSAFLANMSHEIRTPMNAIL
GLSHLLGREVGDARARERVDKIHGAATHLLNIINDILDLSKIEAEKLHLDMQDFLLARLF
DNAENLLRPQLEAKGLRLERHLDPALPPVLRGDAMHLQQILVNFLSNAVKFSDQGHITLG
ARLLSRSQSQVELRLEVADQGIGIAPEQQAALFQAFEQADNSTTRKYGGTGLGLAISKRL
IRLMGGDIGVDSKPGQGSVFWISLRLEVADTAAGTTAATAEQELPARLRARHGGCRILLA
EDNALNQEVAQDLLHDAGLAVSVAEDGHQAVSLAQSGGFDLVLMDVNMPHLDGLQATRAI
RELPGCADLPILAMTAGAFAEDRARCLEAGMNDFVAKPVVPEVLYQALLRWLPARTPAAE
PTPGNGANGEQTQLLNRLHTLLAGDDMQASLLWQQSAHLLLPLLGAWGPQIDQAIEYFDF
DRALSLLEAATPEAVQPAGAG