Protein Info for Dsui_0992 in Dechlorosoma suillum PS
Annotation: putative membrane protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K00805, heptaprenyl diphosphate synthase [EC: 2.5.1.30] (inferred from 73% identity to app:CAP2UW1_4050)Predicted SEED Role
"Heptaprenyl diphosphate synthase component I (EC 2.5.1.30)" in subsystem Polyprenyl Diphosphate Biosynthesis or Sex pheromones in Enterococcus faecalis and other Firmicutes (EC 2.5.1.30)
MetaCyc Pathways
- superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) (10/12 steps found)
- superpathway of menaquinol-7 biosynthesis (8/10 steps found)
- taxadiene biosynthesis (engineered) (10/13 steps found)
- geranylgeranyl diphosphate biosynthesis (1/1 steps found)
- heptaprenyl diphosphate biosynthesis (1/1 steps found)
- ophiobolin F biosynthesis (2/3 steps found)
- methyl phomopsenoate biosynthesis (2/4 steps found)
- plaunotol biosynthesis (1/3 steps found)
- stellatic acid biosynthesis (4/8 steps found)
- superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) (4/10 steps found)
- paspaline biosynthesis (1/6 steps found)
- brassicicene C biosynthesis (1/7 steps found)
- fusicoccin A biosynthesis (1/8 steps found)
- superpathway of phylloquinol biosynthesis (6/15 steps found)
- C25,25 CDP-archaeol biosynthesis (1/10 steps found)
- Methanobacterium thermoautotrophicum biosynthetic metabolism (20/56 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 2.5.1.30
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See G8QJH2 at UniProt or InterPro
Protein Sequence (191 amino acids)
>Dsui_0992 putative membrane protein (Dechlorosoma suillum PS) MTPSATDADCRRVLRIPLSAEDHRIARLAAAAIGLSLIDAAIPTPLPGVKPGLANIVTLI VLARCGWRAAAWVTGLRVLAGSLLLGQFLAPGFFLSATGALFSLLALGAARHLPGRWFGP VSLSVIAAFAHMAGQILLARAWLIPHDGVFLLAPLFACAALFFGTVNGLIAARFLSTPLA AEAAAAESAHV