Protein Info for Dsui_0992 in Dechlorosoma suillum PS

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 transmembrane" amino acids 25 to 46 (22 residues), see Phobius details amino acids 53 to 74 (22 residues), see Phobius details amino acids 84 to 110 (27 residues), see Phobius details amino acids 117 to 143 (27 residues), see Phobius details amino acids 149 to 172 (24 residues), see Phobius details PF07456: Hpre_diP_synt_I" amino acids 28 to 173 (146 residues), 133.3 bits, see alignment E=3.6e-43

Best Hits

KEGG orthology group: K00805, heptaprenyl diphosphate synthase [EC: 2.5.1.30] (inferred from 73% identity to app:CAP2UW1_4050)

Predicted SEED Role

"Heptaprenyl diphosphate synthase component I (EC 2.5.1.30)" in subsystem Polyprenyl Diphosphate Biosynthesis or Sex pheromones in Enterococcus faecalis and other Firmicutes (EC 2.5.1.30)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.5.1.30

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QJH2 at UniProt or InterPro

Protein Sequence (191 amino acids)

>Dsui_0992 putative membrane protein (Dechlorosoma suillum PS)
MTPSATDADCRRVLRIPLSAEDHRIARLAAAAIGLSLIDAAIPTPLPGVKPGLANIVTLI
VLARCGWRAAAWVTGLRVLAGSLLLGQFLAPGFFLSATGALFSLLALGAARHLPGRWFGP
VSLSVIAAFAHMAGQILLARAWLIPHDGVFLLAPLFACAALFFGTVNGLIAARFLSTPLA
AEAAAAESAHV