Protein Info for Dsui_0966 in Dechlorosoma suillum PS

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 675 signal peptide" amino acids 1 to 48 (48 residues), see Phobius details transmembrane" amino acids 324 to 346 (23 residues), see Phobius details PF00672: HAMP" amino acids 346 to 390 (45 residues), 38 bits, see alignment 1.7e-13 PF00015: MCPsignal" amino acids 485 to 640 (156 residues), 144.6 bits, see alignment E=2.9e-46

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QJ03 at UniProt or InterPro

Protein Sequence (675 amino acids)

>Dsui_0966 methyl-accepting chemotaxis protein (Dechlorosoma suillum PS)
MKALFAPAAWLVGRLSYRQKLLATGALFALPLILLGGLLLADRQSALAELEQERAGLALQ
LPALELMLALHDLHGAFQGAAAGEADFQQRLPQRRAAVEQALARVGKLAQEQAGALGPAP
AWAELQGRWQAVAALRPEDEADGGLEAYLELSQLSRQWLGQISDGSRLRRDGDVAAAALV
DTLSVKLPLLVESLGLARDAGLGAVARKRLKSGLRNRLTVVRGGLEPLIGWTLENVDKAA
QLRPGLKAGLEGPAGNVGTASLGLQEVLTTKVIDTTDFDIGAAEYAARGDVAMAAVLDLA
RALTPAIDGLLAERQGRLLLVRNLVLGGLALLLLVIVYGFTGAYISIMRGIHSLRGAAAV
MAGGDLRARVELVSGDEVAEAGHSFNHMAETFAGLIRGNGQAARAVVEASDNLARASQQV
EHASGRQSEAAARTAAAVQQMSVSVAEVAEHARETARMTEEADAAAGRGAVQAEAAAADM
AGVVSGVRESVQLIQSLEERSREIGKVVQTIQEIADQTNLLALNAAIEAARAGEHGRGFS
VVADEVRKLADRTGVSTREIGSTISAIQQDIHQAVAGMDDNSARVDGSTRRVEELSRSLA
EIRHAVGRSAEHVRDIVDATAGQRDASTEIARNIQEIADMAEENHAAIRASSQAVAELGT
LAVGLTDSVAGLVTD