Protein Info for Dsui_0938 in Dechlorosoma suillum PS

Annotation: HD-GYP domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 359 PF08448: PAS_4" amino acids 31 to 157 (127 residues), 28.8 bits, see alignment E=1.9e-10 PF13487: HD_5" amino acids 185 to 345 (161 residues), 128.7 bits, see alignment E=3.1e-41 PF01966: HD" amino acids 193 to 313 (121 residues), 66.7 bits, see alignment E=3.4e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QIX5 at UniProt or InterPro

Protein Sequence (359 amino acids)

>Dsui_0938 HD-GYP domain-containing protein (Dechlorosoma suillum PS)
MTLCEPLPSLGEPVARPPFEEAGARFRPIMDAMTAHIALLDGAGTIVAVNEAWKRFADSN
CGRSPGYGLGLNYLQLLDGMQGCQPCARCSAEEMELARRIAGGIRAVLKGRSPKFQIEYP
CHSPTERRWFLLTVSPFPDDGGPIRAVVAHEDLTPLRAAQEAALHHSAQLAASFSRTVDA
IALAIEKRDAYTAGHQNQVATLCEAIARRLELDEEQRQGLQLGARIHDIGKISVPLDILG
KPGKLSPPELEIIRYHPQVGYEILCGIDFPWPIADMVHQHHERVDGSGYPQGLAGEDICL
EARIIAVADVFDAIISHRPYRAARSREEGLRELALGRGSRFDARVVDALLAHLAEAEGA