Protein Info for Dsui_0857 in Dechlorosoma suillum PS

Annotation: ATP synthase, F1 beta subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 TIGR01039: ATP synthase F1, beta subunit" amino acids 3 to 466 (464 residues), 825 bits, see alignment E=8.8e-253 PF02874: ATP-synt_ab_N" amino acids 6 to 79 (74 residues), 53.6 bits, see alignment E=3.9e-18 PF00006: ATP-synt_ab" amino acids 136 to 348 (213 residues), 240.3 bits, see alignment E=2.8e-75 PF22919: ATP-synt_VA_C" amino acids 352 to 443 (92 residues), 62.6 bits, see alignment E=4.5e-21

Best Hits

Swiss-Prot: 92% identical to ATPB_RALSO: ATP synthase subunit beta (atpD) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K02112, F-type H+-transporting ATPase subunit beta [EC: 3.6.3.14] (inferred from 90% identity to app:CAP2UW1_4352)

MetaCyc: 78% identical to ATP synthase F1 complex subunit beta (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"ATP synthase beta chain (EC 3.6.3.14)" in subsystem F0F1-type ATP synthase (EC 3.6.3.14)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QIA3 at UniProt or InterPro

Protein Sequence (467 amino acids)

>Dsui_0857 ATP synthase, F1 beta subunit (Dechlorosoma suillum PS)
MSQGMIVQCIGAVVDIQFPREAMPKVYDALMLDVAEEHANIEKGLTFEVQQQLGDGIVRT
IALGSSDGLRRGMKVNNTGKPISVPVGHGTLGRIMDVLGRPIDEAGPIASDETRAIHQKA
PAFDELSPSVELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKQHSGL
SVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAERFRDE
GRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLADEMGRLQERITSTKVGSITSI
QAVYVPADDLTDPSPATTFLHLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPQIVGEEH
YNVARGVQMTLQRYKELRDIIAILGMDELAPEDKLAVARARKIQRFLSQPFHVAEVFTGS
PGKYVPLKETIKGFKMIVAGECDNLPEQAFYMVGSIEEAFEKAKTLQ