Protein Info for Dsui_0835 in Dechlorosoma suillum PS

Annotation: conserved hypothetical protein YidD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 76 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR00278: putative membrane protein insertion efficiency factor" amino acids 12 to 76 (65 residues), 90.2 bits, see alignment E=3.1e-30 PF01809: YidD" amino acids 12 to 75 (64 residues), 104.4 bits, see alignment E=1e-34

Best Hits

Swiss-Prot: 70% identical to YIDD_AZOSB: Putative membrane protein insertion efficiency factor (azo3990) from Azoarcus sp. (strain BH72)

KEGG orthology group: K08998, hypothetical protein (inferred from 70% identity to azo:azo3990)

Predicted SEED Role

"Protein YidD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QHU0 at UniProt or InterPro

Protein Sequence (76 amino acids)

>Dsui_0835 conserved hypothetical protein YidD (Dechlorosoma suillum PS)
MKRLRALSIMPFLLLLRVYKYAISPMLGRNCRFEPSCSDYTAEALKKHGVIKGLWLGSRR
LLRCHPFHPGGYDPVP