Protein Info for Dsui_0776 in Dechlorosoma suillum PS

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1306 transmembrane" amino acids 17 to 41 (25 residues), see Phobius details amino acids 339 to 362 (24 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 442 to 565 (124 residues), 51.5 bits, see alignment E=5.3e-18 PF13188: PAS_8" amino acids 443 to 501 (59 residues), 27.6 bits, see alignment (E = 7e-10) PF00989: PAS" amino acids 444 to 492 (49 residues), 34 bits, see alignment (E = 9.1e-12) PF08448: PAS_4" amino acids 449 to 559 (111 residues), 38.7 bits, see alignment E=3.8e-13 PF00512: HisKA" amino acids 578 to 643 (66 residues), 74.8 bits, see alignment 1.6e-24 PF02518: HATPase_c" amino acids 690 to 801 (112 residues), 98.2 bits, see alignment E=1.4e-31 PF00072: Response_reg" amino acids 825 to 941 (117 residues), 62.5 bits, see alignment E=1.5e-20 amino acids 970 to 1084 (115 residues), 89.6 bits, see alignment E=5.6e-29 PF01627: Hpt" amino acids 1134 to 1215 (82 residues), 43.6 bits, see alignment 9.9e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QHN2 at UniProt or InterPro

Protein Sequence (1306 amino acids)

>Dsui_0776 PAS domain S-box (Dechlorosoma suillum PS)
MGAAPSRQNESTIRRSLLIRVAALVFVSIALFSFGLYGLIIRPTVHDLAAREMRGAVEAM
QSRISQKVGQVEYVARIARTWGENGELDLDDVRAFNQRFMPMLRNSPVISSVIFADNQGR
EILLLQRPDGAWNNRITDVQRHGKEVRWMAWQDERTLLSDERVVKDYDPRQRPWHRGALA
LERDDDLHWTQPYTFFTAQQPGITLSTRWRRGGETYVIAFDVLLADLSRFTGSLSVGDHG
HAAVLTNDGLLLALPRHPGYSSDDQVRQALLQPAAKSPVESLRLAVEHWEQNGRGAFFAT
LGREQWITSVQPHRLQDQQLWLVAQAPLWDFIPGALRDVLLLAVLAVLALGLGLGVVMAA
RLARRVAVPLDILAGDSERIGALDFSPRQYRRTGWREIDRLAAAQEHMRETLQDATLRLE
ERVEQRTRELADAREESSRQLVLLQAIMDSMPNPVFFKDAEGRFLGCNRAYEDTFGVGRG
QIVGKTVRELPFLSEEEKQELQAVSEAIIRDGIMMHRELQLPFADGLRHDTLYWANGFSR
EDGTPGGMVGVVVDISERKLMEEELRRARATAEEATEAKSLFLANMSHEIRTPMNAIIGM
AHLAMKTELTPKQRDYVGKIHNAAISLLGIINDILDFSKIEAGKLSLEYVPFSLEDVLDN
VSGLLGLKANEKGLELLFNVNAGTPAGLVGDPLRLNQILTNLVSNAIKFTERGQITLTTR
PVDQAGDRVKLQFWIEDMGIGMSREQLLHLFQAFTQADGSTTRKYGGTGLGLSISRRLVE
MMGGTIWADSTLGEGSTFCFTAWFGRAEELARPRTLPASLAGLRVLVADDNGAAREILGE
ALRHLDLRPDLVASGAEALAQLTEMQGGADPYRVLFLDWQMPDLDGVSTLHKLQQALPQA
QWPRVVMVTAYDQEELRRQTENLGICGILVKPVSASTLFDVLVSLVDADNAPATPLHIAA
PQTRIDGMRILLAEDNEINQQIAVELLQSMGAQVTVAGDGLQAVELLERSPDDSFDLVLM
DLQMPHLDGYDATERLRCQQRFAHLPILAMTAHAMPEERERCLAIGMNDHLAKPIDPTAL
AATLARWYEERPGASAPAPTPAKDGTDALPPIPGVNTTQGLARMAGNQALYRRLLLRFVD
TQTGTGEHIRQALADGDITAAEHLAHTLKGVAGNIGAEVLQQKATALDQALRRNDGQGQK
LESLRQRLAEELAAVTGAIAAALAEEGGPAPTQAAPLDADQRHRARQLLAELAEQLEASE
IHAGQLFRESRALLAGLLPPADLTGLEKAIADYDYDRALNIARAHL