Protein Info for Dsui_0710 in Dechlorosoma suillum PS

Annotation: competence/damage-inducible protein CinA-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 171 PF02464: CinA" amino acids 11 to 164 (154 residues), 202.1 bits, see alignment E=1.9e-64 TIGR00199: amidohydrolase, PncC family" amino acids 17 to 165 (149 residues), 163.8 bits, see alignment E=1.5e-52

Best Hits

Swiss-Prot: 53% identical to PNCC_PSEPU: Nicotinamide-nucleotide amidohydrolase PncC (pncC) from Pseudomonas putida

KEGG orthology group: K03743, (no description) (inferred from 67% identity to app:CAP2UW1_4314)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QH27 at UniProt or InterPro

Protein Sequence (171 amino acids)

>Dsui_0710 competence/damage-inducible protein CinA-like protein (Dechlorosoma suillum PS)
MSGGPAQAELEALAAAVGEALLQRGERLATAESCTGGWIGQCCTAIAGSSNWFDRGFITY
SNEAKQDMLGVPRQTLRSEGAVSEATAGAMVQGAIARSRAQWALAVSGIAGPTGGTPAKP
VGTVCFAWAGPEDWVALETRHFAGDREAVRAQTVAHALDVLRQRLQAPVLA