Protein Info for Dsui_0591 in Dechlorosoma suillum PS

Annotation: deoxyribodipyrimidine photolyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 482 PF00875: DNA_photolyase" amino acids 5 to 162 (158 residues), 148.2 bits, see alignment E=2.3e-47 PF03441: FAD_binding_7" amino acids 270 to 469 (200 residues), 302.2 bits, see alignment E=1.5e-94

Best Hits

KEGG orthology group: K01669, deoxyribodipyrimidine photo-lyase [EC: 4.1.99.3] (inferred from 66% identity to tmz:Tmz1t_3694)

Predicted SEED Role

"Deoxyribodipyrimidine photolyase (EC 4.1.99.3)" (EC 4.1.99.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.1.99.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QFY0 at UniProt or InterPro

Protein Sequence (482 amino acids)

>Dsui_0591 deoxyribodipyrimidine photolyase (Dechlorosoma suillum PS)
MLESALVWFRRDLRDYDHAALYHALKSARRVWCAFVFDSDILEALPGRSDRRVEFIRESL
AELHVALQAKGGGLMVRHGPAAAEIAALARQLGVVAVFANRDYEPRAKARDAAVAADLER
DGIALHLFKDQAVFDGDEVLTKGGTPYTVFTPYKNCWLGKLEDFHVRPYPVDRYSGHLAP
PPDGGGVPSLADIGFLPTDLERIGVVPGMSGGAARWQDFRQRLERYAEQRDFPAVKGVSY
LSVYLRFGCLSIRQLAGEAWRSGGPGAATWLSELIWRDFYFMVLDRFPQLPDGCFKPEFD
RVLWDEAPALLAAWREGRTGYPLVDAAMRQLAQTGWMHNRLRMVVASFLTKDLGLDWRLG
EGHFADLLLDFDLSANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPQGRFIRRYVPEL
AGVPDKHIHAPWRMAPLEQQAAGVIIGRDYPAPVVDHNLARQRTLARFEAVKGKAGKEAA
AE