Protein Info for Dsui_0359 in Dechlorosoma suillum PS

Annotation: 50S ribosomal protein L3, bacterial

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 212 TIGR03625: 50S ribosomal protein uL3" amino acids 4 to 207 (204 residues), 281.7 bits, see alignment E=1.8e-88 PF00297: Ribosomal_L3" amino acids 55 to 184 (130 residues), 44 bits, see alignment E=7.6e-16

Best Hits

Swiss-Prot: 84% identical to RL3_DECAR: 50S ribosomal protein L3 (rplC) from Dechloromonas aromatica (strain RCB)

KEGG orthology group: K02906, large subunit ribosomal protein L3 (inferred from 84% identity to dar:Daro_0319)

Predicted SEED Role

"LSU ribosomal protein L3p (L3e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QNX8 at UniProt or InterPro

Protein Sequence (212 amino acids)

>Dsui_0359 50S ribosomal protein L3, bacterial (Dechlorosoma suillum PS)
MSLGLVGRKVGMTRVFTDDGATVPVTVLDVSNNRVSQIKTPETDGYAAVQVTFGKRRASR
VNKSLAGHLAKAGVEAGHVLKEFPVTAEQLAGLKAGDQIAVTIFAVGQKVDITGTSQGKG
FAGAIKRHNFSSNRASHGNSVSHNAPGSIGMAQDPGRVFPGKRMAGHLGAVKSTVQCLEV
VRVDVERQLLLVKGAVPGSKGSDVIVRPAVKA