Protein Info for Dsui_0330 in Dechlorosoma suillum PS

Annotation: response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 PF00072: Response_reg" amino acids 6 to 117 (112 residues), 94.8 bits, see alignment E=3.9e-31 PF13581: HATPase_c_2" amino acids 175 to 291 (117 residues), 32.6 bits, see alignment E=7.2e-12

Best Hits

KEGG orthology group: None (inferred from 53% identity to dar:Daro_0110)

Predicted SEED Role

"two-component response regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QNF5 at UniProt or InterPro

Protein Sequence (297 amino acids)

>Dsui_0330 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains (Dechlorosoma suillum PS)
MTHHLLIVDDEPLNLEILSEYFDGQGYRLSMAENGEVAWAMLRQHPDVDLVLLDRMMPGI
DGVELLKRIKADPELKPIPVIMQTAASAPEQVREGLLAGALYYLTKPYERDSLISIVRAA
LTDGNTRRDLQQRLREHTNALRLMESARFSLSTLDEVGCLAVFLAQACPEPEGAVLGLSE
LLVNAIEHGNLGISYEEKSSLKRSDRWQEEISRRLQLPENAGKRVDVTFERDGSTIRICI
TDQGEGFDWNRYLDFDPARAFDPNGRGIAMARLGSFQDLQYQGKGNVVLATIGETLP