Protein Info for Dsui_0306 in Dechlorosoma suillum PS

Annotation: putative permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 transmembrane" amino acids 22 to 56 (35 residues), see Phobius details amino acids 62 to 70 (9 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 116 to 134 (19 residues), see Phobius details amino acids 142 to 169 (28 residues), see Phobius details amino acids 183 to 203 (21 residues), see Phobius details amino acids 210 to 228 (19 residues), see Phobius details amino acids 240 to 261 (22 residues), see Phobius details PF01925: TauE" amino acids 29 to 254 (226 residues), 102.2 bits, see alignment E=1.9e-33

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 51% identity to dar:Daro_3914)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QND1 at UniProt or InterPro

Protein Sequence (262 amino acids)

>Dsui_0306 putative permease (Dechlorosoma suillum PS)
MPFDTLLPAALHGALTDQLPAPAALAFAALALVAAYAIFTLVGFGSAMVASGPLAAVMPV
PRIIPLLALLDCAGAAGRGWRQRRHIDRAQLLRLAPAMALGQALGIALLGRLPGHWLAAA
LGLFILAYGLWGLWQPRPPALLLRWGVVCGVIGGIFGGLFGSGGFLYAAYLSRQPLEREV
FRATQAVLMALSTGLRVILCALAGLLDPSLLLLALLAVPPMLLGTWLGHHLDLRLSPERF
LRLLNGTLAAAGLGLLARAALG