Protein Info for CSW01_18785 in Vibrio cholerae E7946 ATCC 55056

Annotation: DUF808 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details transmembrane" amino acids 72 to 100 (29 residues), see Phobius details amino acids 155 to 173 (19 residues), see Phobius details amino acids 180 to 202 (23 residues), see Phobius details amino acids 239 to 260 (22 residues), see Phobius details amino acids 282 to 306 (25 residues), see Phobius details PF05661: DUF808" amino acids 4 to 302 (299 residues), 371.1 bits, see alignment E=2e-115

Best Hits

KEGG orthology group: K09781, hypothetical protein (inferred from 100% identity to vco:VC0395_0308)

Predicted SEED Role

"FIG01199731: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (311 amino acids)

>CSW01_18785 DUF808 domain-containing protein (Vibrio cholerae E7946 ATCC 55056)
MAGASLLTLLDDIATVLDDVALMSKMAAKKTAGVLGDDLALNAQQVSGVAAEREIPVVWA
VAKGSFRNKLILVPAALIISSIAPWLIMPLLLIGGLFLCFEGAEKILEKWLHPEPKQNAE
QRAAAIVNEGLETESLATESLAEYEKRKIGGAIRTDFILSAEIIVIALGTVQGHSMLTQI
LVVSLIAVIMTIGVYGLVAGIVKLDDLGFYLQRQSKGQGLKASLGGVLVRFAPKLMKGLT
VVGTAAMFLVGGGIVVHNVPAVHHILEPMLDVVHAWPVVGTLMPTLMNGVIGVVAGSLLV
AVMEVWHKVRG