Protein Info for CSW01_18120 in Vibrio cholerae E7946 ATCC 55056

Annotation: DUF2238 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 195 transmembrane" amino acids 7 to 24 (18 residues), see Phobius details amino acids 30 to 49 (20 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 98 to 116 (19 residues), see Phobius details amino acids 124 to 144 (21 residues), see Phobius details amino acids 147 to 147 (1 residues), see Phobius details amino acids 174 to 190 (17 residues), see Phobius details PF09997: DUF2238" amino acids 40 to 176 (137 residues), 174.9 bits, see alignment E=4.1e-56

Best Hits

KEGG orthology group: K08984, putative membrane protein (inferred from 100% identity to vch:VCA0789)

Predicted SEED Role

"FIG028593: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (195 amino acids)

>CSW01_18120 DUF2238 domain-containing protein (Vibrio cholerae E7946 ATCC 55056)
MPLSRPLIGLTLFYSLIFVFSAIAPTSRAVWFAEIIPAILVLATIWWVSLRWSMSTTAYV
LMFVWLCLHTIGAKYTFAEVPFDWFNTLIGSTRNQFDRVAHFSIGLYAYPIAEWLLRKQQ
TKPWLAYSFALFSLMSLAAAYEIIEWWYAALAGGEEGIAFLGSQGDIWDAQKDMLCDTLG
AITALCLLAWQRARG