Protein Info for CSW01_17695 in Vibrio cholerae E7946 ATCC 55056

Annotation: lysoplasmalogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 229 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 47 to 67 (21 residues), see Phobius details amino acids 73 to 91 (19 residues), see Phobius details amino acids 98 to 118 (21 residues), see Phobius details amino acids 124 to 143 (20 residues), see Phobius details amino acids 153 to 172 (20 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 210 to 228 (19 residues), see Phobius details PF07947: YhhN" amino acids 48 to 227 (180 residues), 181.5 bits, see alignment E=6.4e-58

Best Hits

KEGG orthology group: None (inferred from 100% identity to vch:VCA0703)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (229 amino acids)

>CSW01_17695 lysoplasmalogenase (Vibrio cholerae E7946 ATCC 55056)
MLHFLSFVYGRFADVIADVIADRVMWLLIIALCVVQLITIDRGPRWMFYLSKPTPILLMA
LSIVITPNPLSDFAWWIVAGLLLSALGDILLMHPKDKFVSGLLAFLLAHIAYTLGFSTTI
TTFTWWPLAIWSALGVIAFLLLLPNLGKMTFPVAGYIAVIVFMACTATEYWLGYNNNASR
LALMGAAMFMLSDLVLAIDRFRSSSQFSRHVVMFSYYSAQALLTLSVIP