Protein Info for CSW01_17625 in Vibrio cholerae E7946 ATCC 55056

Annotation: iron ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 transmembrane" amino acids 23 to 42 (20 residues), see Phobius details amino acids 64 to 80 (17 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 148 to 172 (25 residues), see Phobius details amino acids 200 to 224 (25 residues), see Phobius details amino acids 235 to 260 (26 residues), see Phobius details amino acids 280 to 303 (24 residues), see Phobius details amino acids 328 to 351 (24 residues), see Phobius details amino acids 388 to 409 (22 residues), see Phobius details amino acids 439 to 461 (23 residues), see Phobius details amino acids 492 to 517 (26 residues), see Phobius details amino acids 529 to 549 (21 residues), see Phobius details amino acids 555 to 573 (19 residues), see Phobius details amino acids 617 to 640 (24 residues), see Phobius details amino acids 660 to 685 (26 residues), see Phobius details PF00528: BPD_transp_1" amino acids 215 to 406 (192 residues), 49.8 bits, see alignment E=1.8e-17 amino acids 507 to 684 (178 residues), 44.6 bits, see alignment E=6.9e-16

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 100% identity to vch:VCA0686)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (700 amino acids)

>CSW01_17625 iron ABC transporter permease (Vibrio cholerae E7946 ATCC 55056)
MTMHEPSQALKLTLHQPVKTDPVFYWLAAVLFSFILLPSFALDYGLFESTPDEFYAAMGW
SEPNISWFWFSLPLLLAFRPRQAQGRQSTNRHYLDIAYSSFCMLAILLSAWLSGKGLGYS
SIILFTALGAIMTLAFARLEYLGGDHFVIGSLISIILLIVIFIVYPSIAIFLPMFKDDMG
NWTAWQFMTILSQSHTLTVIYNSIALGIAVGVGATFFGLIFAIYTTRIAKRSAFIARVFS
ILPIVTPPFIVGLGVTLMLGRSGYITELMVDGFGLQKTNWLYGFTGIWLAQVLAFAPMSF
MILDGALKSLHPSLEEASYTLKANRYQTFFGIIMPLLKPALANSFLIIFVQSLADFSNPL
VLGGSFDVLATQIYFYIAGAQLDYASASTLGSVLLLFSLAIFVVQYLWIGQRSYVTISGK
AYRGDVQEMPASLKLGVTVTLYAWMIFNVLLYGSIFFGSFTVNWGVDYTLTFKNYLNLFG
NGMSDGAWPSLITTMIYAGVAAPITALFGLLIAYVVVRQQFYGKKVIEFSTMLCFAVPGT
VAGVSYILAFNDAPIYLTGTAAIVVISMVMRNVPVGIRSGIAGLGQLDKSLDEASLSLRA
SSLQTIRYIILPLLRPAILSTLVYSFVRAMTTVSAIIFLVTPETRVATSYILNRVEDGEY
GIAIAYGSVLIVVMLAIILLFDLLVGEARVSRSKATNQDS