Protein Info for CSW01_17410 in Vibrio cholerae E7946 ATCC 55056

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 154 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 47 to 66 (20 residues), see Phobius details amino acids 94 to 116 (23 residues), see Phobius details amino acids 123 to 143 (21 residues), see Phobius details PF20398: DUF6691" amino acids 12 to 147 (136 residues), 145 bits, see alignment E=1e-46

Best Hits

KEGG orthology group: K07112, (no description) (inferred from 98% identity to vco:VC0395_0584)

Predicted SEED Role

"Predicted transporter component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (154 amino acids)

>CSW01_17410 transporter (Vibrio cholerae E7946 ATCC 55056)
MVMNKLLFRATSLVAGLLFGLGMVVSGMADPAKVIGFLDVAGTWDPSLMFVMGGALAIFM
PAYFFLIKPKAKPVNAEVFCLANNTKIDRRLISGSVIFGLGWGLVGICPGPVVSSLALGN
LGAWVFFPAMMVGLGTTNLLICIRNRKESQTQTA