Protein Info for CSW01_17350 in Vibrio cholerae E7946 ATCC 55056

Annotation: AbrB family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 22 to 22 (1 residues), see Phobius details amino acids 56 to 76 (21 residues), see Phobius details amino acids 83 to 106 (24 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 144 to 164 (21 residues), see Phobius details amino acids 175 to 194 (20 residues), see Phobius details amino acids 204 to 224 (21 residues), see Phobius details amino acids 230 to 250 (21 residues), see Phobius details amino acids 262 to 285 (24 residues), see Phobius details amino acids 291 to 336 (46 residues), see Phobius details PF05145: AbrB" amino acids 63 to 339 (277 residues), 172.4 bits, see alignment E=6.1e-55 TIGR03082: membrane protein AbrB duplication" amino acids 183 to 335 (153 residues), 98.4 bits, see alignment E=1.8e-32

Best Hits

KEGG orthology group: K07120, (no description) (inferred from 100% identity to vch:VCA0629)

Predicted SEED Role

"Putative ammonia monooxygenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (346 amino acids)

>CSW01_17350 AbrB family transcriptional regulator (Vibrio cholerae E7946 ATCC 55056)
MSERVSFTLFIQILIIAAVAAGTGTLLSIPLSEMFIASGLVIVLHKKRWLTIHTPPWLLL
FVQVVLGISVGATISLSELGTTLTLPVIVGLVCCLTLQIISSYLWLTKKEGWTPFESLLG
AVPGAMAAILVISESSEKPSAKVVYSHSVRLMILTLLALLISNSAPDSASVDGSLTVYAW
LIFLALALMSLLLGKASTLLGIPAPYMLAALLITASFNGFATGIDMQLPKWMVIFATALL
GILIGSRIADTTLREAMAYSRAGVMVTMIGLLVAVGVSGVFSILIDKSWVVLLLSWVPGS
VEAMTAVALLLGMEPAFVMINHALRLLLLYSLPAMLKKQLEELRGR