Protein Info for CSW01_17210 in Vibrio cholerae E7946 ATCC 55056

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 490 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 44 to 64 (21 residues), see Phobius details amino acids 75 to 107 (33 residues), see Phobius details amino acids 153 to 184 (32 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 231 to 249 (19 residues), see Phobius details amino acids 256 to 277 (22 residues), see Phobius details amino acids 307 to 326 (20 residues), see Phobius details amino acids 340 to 360 (21 residues), see Phobius details amino acids 374 to 398 (25 residues), see Phobius details amino acids 410 to 430 (21 residues), see Phobius details amino acids 450 to 471 (22 residues), see Phobius details PF07690: MFS_1" amino acids 9 to 286 (278 residues), 57.1 bits, see alignment E=7.7e-20 TIGR00924: amino acid/peptide transporter (Peptide:H+ symporter)" amino acids 11 to 461 (451 residues), 139.4 bits, see alignment E=9.6e-45

Best Hits

KEGG orthology group: None (inferred from 100% identity to vco:VC0395_0540)

Predicted SEED Role

"Di-/tripeptide transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (490 amino acids)

>CSW01_17210 MFS transporter (Vibrio cholerae E7946 ATCC 55056)
MWNRLNKSMMFCQMMFGLSFYGVMVILTRFFLEDLNYSEADTMMVVGAFSSIGPLFAIAG
GFIADKFLGAYRSLAISYVTFAIGYALLVLGASSTHVPLSLVGIALASYARGLMSPSYPS
LYKRTFASEEDFNNGYPVNYSVNNVGALLGQYLFPMLVLLLGFHGSFALSALMATLATIT
LVVMRRPLIEVASEKDQQSVSMGNWIAFTLLSLAMVGLVFFMFSNMVIGQNIVYAIGLAA
IVYFINLMLKARRAEALKMGTILIVTVLTTCFFVYYGQMMTSMTMVTINTMRGELFGIIP
IAPEASMAMNPLWCIVAGPVISYLFPTLEKRGITFSTATKIAFAFVLTAISFGILTFAVS
TVGEEAIIRPEVFLVIHFFQAFAEVVVGSLVVAFILSVAPKQIENFSVSLFYIAMALSGI
IGAVFSTSIALEKGQVVTQQIVQIIYGDYFKLLTVLAVVMVGVALLASVLIRKMLAAADV
NSPSIQDKQA