Protein Info for CSW01_16995 in Vibrio cholerae E7946 ATCC 55056

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details amino acids 47 to 66 (20 residues), see Phobius details amino acids 75 to 95 (21 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 133 to 153 (21 residues), see Phobius details amino acids 156 to 158 (3 residues), see Phobius details amino acids 162 to 182 (21 residues), see Phobius details amino acids 224 to 246 (23 residues), see Phobius details amino acids 258 to 276 (19 residues), see Phobius details amino acids 288 to 306 (19 residues), see Phobius details amino acids 312 to 335 (24 residues), see Phobius details amino acids 347 to 369 (23 residues), see Phobius details amino acids 376 to 395 (20 residues), see Phobius details PF07690: MFS_1" amino acids 14 to 297 (284 residues), 109.9 bits, see alignment E=6.8e-36 amino acids 261 to 397 (137 residues), 51.9 bits, see alignment E=3e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to vco:VC0395_0486)

Predicted SEED Role

"Oxalate/formate antiporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>CSW01_16995 MFS transporter (Vibrio cholerae E7946 ATCC 55056)
MSKIDKAMRILLAGFCINLCLGILYAWSVFNKALVTDFGWSAADASSPYAIATIAFSVCL
LVAGILQDRMGPRNILILGTTLTGLGMIASGFASSVLMLNLTFGVMTGAGIGFGYACLSP
SAMKWFHPSKKGMVNGLIAAGFGLAAIYLAPLTSALITHLGIQTSFMILGAGVLAIAVPL
ACTINNPPAGYVPAEPKLKAGQEAKVVAKVANLSWKAMLKTPQFYALWLMYALAASVGLM
IIGNITNIASVQANLPNAVYLASILAIFNSGGRVAAGILSDKIGGVRTLLLAFLLQGGNM
VLFATFDSEFTLIIGTAIAAVGYGTLLAVFPSITAEFYGLKNYGTNYGVLYTSWGIGGAI
GAAVVGYSMTHGGGYNLAYTISAAMMAVCILLALITKPISAEKVAQLQTA